IL_5IMR_192
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GCAAU*AGC
- Length
- 8 nucleotides
- Bulged bases
- 5IMR|1|D|A|1321, 5IMR|1|D|A|1322, 5IMR|1|D|G|1332
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMR_192 not in the Motif Atlas
- Homologous match to IL_4WF9_050
- Geometric discrepancy: 0.4156
- The information below is about IL_4WF9_050
- Detailed Annotation
- Major groove minor groove platform with tHH
- Broad Annotation
- No text annotation
- Motif group
- IL_83150.2
- Basepair signature
- cWW-tHH-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
5IMR|1|D|G|1319
5IMR|1|D|C|1320
5IMR|1|D|A|1321
5IMR|1|D|A|1322
5IMR|1|D|U|1323
*
5IMR|1|D|A|1331
5IMR|1|D|G|1332
5IMR|1|D|C|1333
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain o
- 50S ribosomal protein L22
- Chain p
- 50S ribosomal protein L23
Coloring options: