IL_5IMR_194

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGCGAACU*AGGAGGUAUA

Length

18 nucleotides

Bulged bases

5IMR|1|D|G|1801, 5IMR|1|D|G|1816, 5IMR|1|D|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|U|1798
5IMR|1|D|G|1799
5IMR|1|D|C|1800
5IMR|1|D|G|1801
5IMR|1|D|A|1802
5IMR|1|D|A|1803
5IMR|1|D|C|1804
5IMR|1|D|U|1805
*
5IMR|1|D|A|1812
5IMR|1|D|G|1813
5IMR|1|D|G|1814
5IMR|1|D|A|1815
5IMR|1|D|G|1816
5IMR|1|D|G|1817
5IMR|1|D|U|1818
5IMR|1|D|A|1819
5IMR|1|D|U|1820
5IMR|1|D|A|1821

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain a

50S ribosomal protein L2