IL_5IMR_197

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CCUGCGUAGGAUAG*CCUG

Length

18 nucleotides

Bulged bases

5IMR|1|D|U|2109, 5IMR|1|D|G|2116, 5IMR|1|D|A|2117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|C|2107
5IMR|1|D|C|2108
5IMR|1|D|U|2109
5IMR|1|D|G|2110
5IMR|1|D|C|2111
5IMR|1|D|G|2112
5IMR|1|D|U|2113
5IMR|1|D|A|2114
5IMR|1|D|G|2115
5IMR|1|D|G|2116
5IMR|1|D|A|2117
5IMR|1|D|U|2118
5IMR|1|D|A|2119
5IMR|1|D|G|2120
*
5IMR|1|D|C|2178
5IMR|1|D|C|2179
5IMR|1|D|U|2180
5IMR|1|D|G|2181

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain Z

50S ribosomal protein L1