IL_5IQR_057

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

5IQR|1|1|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IQR_057 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.095

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5IQR|1|1|C|1437
5IQR|1|1|U|1438
5IQR|1|1|A|1439
5IQR|1|1|U|1440
*
5IQR|1|1|A|1551
5IQR|1|1|A|1552
5IQR|1|1|A|1553
5IQR|1|1|U|1554
5IQR|1|1|G|1555

Current chains

Chain 1

LSU rRNA

Nearby chains