IL_5IQR_089

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUG*UAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IQR_089 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.2103

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

5IQR|1|1|U|2105
5IQR|1|1|U|2106
5IQR|1|1|G|2107
*
5IQR|1|1|U|2182
5IQR|1|1|A|2183
5IQR|1|1|A|2184

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain 4

Transfer RNA; tRNA