IL_5IQR_130

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5IQR|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IQR_130 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.138

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5IQR|1|2|G|147
5IQR|1|2|G|148
5IQR|1|2|A|149
5IQR|1|2|U|150
5IQR|1|2|A|151
5IQR|1|2|A|152
5IQR|1|2|C|153
*
5IQR|1|2|G|168
5IQR|1|2|C|169
5IQR|1|2|U|170
5IQR|1|2|A|171
5IQR|1|2|A|172
5IQR|1|2|U|173
5IQR|1|2|A|174
5IQR|1|2|C|175

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain y

30S ribosomal protein S20