IL_5IQR_141

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IQR_141 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1573

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5IQR|1|2|G|450
5IQR|1|2|A|451
5IQR|1|2|A|452
5IQR|1|2|G|453
5IQR|1|2|G|454
5IQR|1|2|G|455
*
5IQR|1|2|C|477
5IQR|1|2|A|478
5IQR|1|2|U|479
5IQR|1|2|U|480
5IQR|1|2|G|481
5IQR|1|2|A|482
5IQR|1|2|C|483

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain u

30S ribosomal protein S16