IL_5IQR_165

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUUUC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IQR_165 not in the Motif Atlas

Geometric match to IL_9AXU_008

Geometric discrepancy: 0.3711

The information below is about IL_9AXU_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95349.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5IQR|1|2|G|1006
5IQR|1|2|U|1007
5IQR|1|2|U|1008
5IQR|1|2|U|1009
5IQR|1|2|U|1010
5IQR|1|2|C|1011
*
5IQR|1|2|G|1018
5IQR|1|2|A|1019
5IQR|1|2|G|1020
5IQR|1|2|A|1021
5IQR|1|2|A|1022
5IQR|1|2|U|1023

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain s

30S ribosomal protein S14

Chain x

30S ribosomal protein S19