IL_5IT8_045

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAAGUU*AAUGUGCCUUCGGGAAC

Length

23 nucleotides

Bulged bases

5IT8|1|AA|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_045 not in the Motif Atlas

Homologous match to IL_5J7L_045

Geometric discrepancy: 0.0158

The information below is about IL_5J7L_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13394.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

5IT8|1|AA|G|1003
5IT8|1|AA|A|1004
5IT8|1|AA|A|1005
5IT8|1|AA|G|1006
5IT8|1|AA|U|1007
5IT8|1|AA|U|1008
*
5IT8|1|AA|A|1021
5IT8|1|AA|A|1022
5IT8|1|AA|U|1023
5IT8|1|AA|G|1024
5IT8|1|AA|U|1025
5IT8|1|AA|G|1026
5IT8|1|AA|C|1027
5IT8|1|AA|C|1028
5IT8|1|AA|U|1029
5IT8|1|AA|U|1030
5IT8|1|AA|C|1031
5IT8|1|AA|G|1032
5IT8|1|AA|G|1033
5IT8|1|AA|G|1034
5IT8|1|AA|A|1035
5IT8|1|AA|A|1036
5IT8|1|AA|C|1037

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14