IL_5IT8_092

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5IT8|1|BA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_092 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0428

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5IT8|1|BA|C|569
5IT8|1|BA|G|570
5IT8|1|BA|U|571
5IT8|1|BA|A|572
5IT8|1|BA|A|573
5IT8|1|BA|A|574
5IT8|1|BA|G|575
*
5IT8|1|BA|C|880
5IT8|1|BA|G|881

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BL

30S ribosomal protein S12

Chain BQ

30S ribosomal protein S17