IL_5IT8_119
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CUGC*GAGGAAG
- Length
- 11 nucleotides
- Bulged bases
- 5IT8|1|BA|U|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT8_119 not in the Motif Atlas
- Homologous match to IL_5J7L_053
- Geometric discrepancy: 0.0445
- The information below is about IL_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42032.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5IT8|1|BA|C|1158
5IT8|1|BA|U|1159
5IT8|1|BA|G|1160
5IT8|1|BA|C|1161
*
5IT8|1|BA|G|1175
5IT8|1|BA|A|1176
5IT8|1|BA|G|1177
5IT8|1|BA|G|1178
5IT8|1|BA|A|1179
5IT8|1|BA|A|1180
5IT8|1|BA|G|1181
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BB
- 30S ribosomal protein S2
- Chain BI
- 30S ribosomal protein S9
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