IL_5IT8_140

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

5IT8|1|CA|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_140 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.033

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5IT8|1|CA|C|274
5IT8|1|CA|C|275
5IT8|1|CA|U|276
5IT8|1|CA|G|277
5IT8|1|CA|A|278
5IT8|1|CA|A|279
5IT8|1|CA|U|280
5IT8|1|CA|C|281
*
5IT8|1|CA|G|359
5IT8|1|CA|U|360
5IT8|1|CA|G|361
5IT8|1|CA|A|362
5IT8|1|CA|G|363

Current chains

Chain CA

23S rRNA

Nearby chains