IL_5IT8_161

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_161 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.0431

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5IT8|1|CA|G|875
5IT8|1|CA|C|876
5IT8|1|CA|A|877
5IT8|1|CA|A|878
5IT8|1|CA|G|879
*
5IT8|1|CA|C|898
5IT8|1|CA|A|899
5IT8|1|CA|A|900
5IT8|1|CA|C|901
5IT8|1|CA|C|902

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CN

50S ribosomal protein L16