IL_5IT8_174

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

5IT8|1|CA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_174 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3329

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5IT8|1|CA|C|1196
5IT8|1|CA|G|1197
5IT8|1|CA|U|1198
5IT8|1|CA|U|1199
*
5IT8|1|CA|A|1246
5IT8|1|CA|A|1247
5IT8|1|CA|G|1248
5IT8|1|CA|U|1249
5IT8|1|CA|G|1250

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CM

50S ribosomal protein L15

Chain CR

50S ribosomal protein L20