IL_5IT8_195

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

5IT8|1|CA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_195 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.1156

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5IT8|1|CA|A|1669
5IT8|1|CA|C|1670
5IT8|1|CA|U|1671
5IT8|1|CA|A|1672
5IT8|1|CA|G|1673
5IT8|1|CA|G|1674
*
5IT8|1|CA|C|1990
5IT8|1|CA|U|1991
5IT8|1|CA|G|1992
5IT8|1|CA|U|1993

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CL

50S ribosomal protein L14