IL_5IT8_207

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

5IT8|1|CA|A|1938, 5IT8|1|CA|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_207 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1118

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

5IT8|1|CA|C|1934
5IT8|1|CA|G|1935
5IT8|1|CA|A|1936
5IT8|1|CA|A|1937
5IT8|1|CA|A|1938
5IT8|1|CA|5MU|1939
5IT8|1|CA|U|1940
5IT8|1|CA|C|1941
5IT8|1|CA|C|1942
5IT8|1|CA|U|1943
5IT8|1|CA|U|1944
5IT8|1|CA|G|1945
*
5IT8|1|CA|C|1961
5IT8|1|CA|5MC|1962
5IT8|1|CA|U|1963
5IT8|1|CA|G|1964

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2