IL_5IT8_212

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

5IT8|1|CA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_212 not in the Motif Atlas

Geometric match to IL_5TBW_094

Geometric discrepancy: 0.0862

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

5IT8|1|CA|A|2070
5IT8|1|CA|A|2071
*
5IT8|1|CA|U|2438
5IT8|1|CA|A|2439
5IT8|1|CA|C|2440
5IT8|1|CA|U|2441

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2