IL_5IT8_213

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

5IT8|1|CA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_213 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.1179

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5IT8|1|CA|U|2081
5IT8|1|CA|A|2082
5IT8|1|CA|G|2083
*
5IT8|1|CA|U|2236
5IT8|1|CA|G|2237
5IT8|1|CA|G|2238
5IT8|1|CA|G|2239

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2

Chain CY

50S ribosomal protein L28