3D structure

PDB id
5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
High-resolution structure of the Escherichia coli ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.12 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IT8_226 not in the Motif Atlas
Homologous match to IL_5J7L_338
Geometric discrepancy: 0.0837
The information below is about IL_5J7L_338
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

5IT8|1|CA|C|2466
5IT8|1|CA|C|2467
5IT8|1|CA|A|2468
5IT8|1|CA|A|2469
5IT8|1|CA|G|2470
*
5IT8|1|CA|C|2480
5IT8|1|CA|G|2481
5IT8|1|CA|A|2482
5IT8|1|CA|C|2483
5IT8|1|CA|G|2484

Current chains

Chain CA
23S rRNA

Nearby chains

Chain C5
50S ribosomal protein L36
Chain CN
50S ribosomal protein L16

Coloring options:


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