IL_5IT8_252
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 5IT8|1|DA|U|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT8_252 not in the Motif Atlas
- Homologous match to IL_5J7L_248
- Geometric discrepancy: 0.0377
- The information below is about IL_5J7L_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37015.1
- Basepair signature
- cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5IT8|1|DA|G|81
5IT8|1|DA|U|82
5IT8|1|DA|A|83
5IT8|1|DA|A|84
5IT8|1|DA|G|85
*
5IT8|1|DA|C|97
5IT8|1|DA|G|98
5IT8|1|DA|U|99
5IT8|1|DA|U|100
5IT8|1|DA|A|101
5IT8|1|DA|U|102
5IT8|1|DA|A|103
5IT8|1|DA|A|104
5IT8|1|DA|C|105
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DV
- 50S ribosomal protein L24
- Chain DZ
- 50S ribosomal protein L29
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