IL_5IT8_290

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

5IT8|1|DA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_290 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2766

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

5IT8|1|DA|G|1087
5IT8|1|DA|A|1088
5IT8|1|DA|A|1089
5IT8|1|DA|A|1090
5IT8|1|DA|G|1091
*
5IT8|1|DA|C|1100
5IT8|1|DA|U|1101
5IT8|1|DA|C|1102

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D5

50S ribosomal protein L36

Chain DJ

50S ribosomal protein L11