IL_5IT8_292

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

5IT8|1|DA|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_292 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.0471

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

5IT8|1|DA|G|1202
5IT8|1|DA|U|1203
5IT8|1|DA|A|1204
5IT8|1|DA|A|1205
5IT8|1|DA|G|1206
*
5IT8|1|DA|U|1240
5IT8|1|DA|A|1241
5IT8|1|DA|U|1242
5IT8|1|DA|C|1243

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DM

50S ribosomal protein L15

Chain DR

50S ribosomal protein L20