IL_5IT8_300

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

5IT8|1|DA|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_300 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.0722

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5IT8|1|DA|C|1417
5IT8|1|DA|G|1418
5IT8|1|DA|A|1419
5IT8|1|DA|A|1420
5IT8|1|DA|G|1421
*
5IT8|1|DA|C|1577
5IT8|1|DA|U|1578
5IT8|1|DA|A|1579
5IT8|1|DA|A|1580
5IT8|1|DA|G|1581

Current chains

Chain DA

23S rRNA

Nearby chains