IL_5IT8_328

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GU(G7M)A*UCC

Length

7 nucleotides

Bulged bases

5IT8|1|DA|U|2068

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_328 not in the Motif Atlas

Homologous match to IL_5J7L_323

Geometric discrepancy: 0.0799

The information below is about IL_5J7L_323

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT8|1|DA|G|2067
5IT8|1|DA|U|2068
5IT8|1|DA|G7M|2069
5IT8|1|DA|A|2070
*
5IT8|1|DA|U|2441
5IT8|1|DA|C|2442
5IT8|1|DA|C|2443

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DM

50S ribosomal protein L15