IL_5IT8_333

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAUGUGUAGGAUAGGUG*CACCCUUU

Length

25 nucleotides

Bulged bases

5IT8|1|DA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_333 not in the Motif Atlas

Geometric match to IL_5J7L_328

Geometric discrepancy: 0.018

The information below is about IL_5J7L_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20245.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

5IT8|1|DA|G|2107
5IT8|1|DA|A|2108
5IT8|1|DA|U|2109
5IT8|1|DA|G|2110
5IT8|1|DA|U|2111
5IT8|1|DA|G|2112
5IT8|1|DA|U|2113
5IT8|1|DA|A|2114
5IT8|1|DA|G|2115
5IT8|1|DA|G|2116
5IT8|1|DA|A|2117
5IT8|1|DA|U|2118
5IT8|1|DA|A|2119
5IT8|1|DA|G|2120
5IT8|1|DA|G|2121
5IT8|1|DA|U|2122
5IT8|1|DA|G|2123
*
5IT8|1|DA|C|2175
5IT8|1|DA|A|2176
5IT8|1|DA|C|2177
5IT8|1|DA|C|2178
5IT8|1|DA|C|2179
5IT8|1|DA|U|2180
5IT8|1|DA|U|2181
5IT8|1|DA|U|2182

Current chains

Chain DA

23S rRNA

Nearby chains