IL_5IT8_335

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5IT8|1|DA|U|2131, 5IT8|1|DA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_335 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.0281

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5IT8|1|DA|C|2129
5IT8|1|DA|U|2130
5IT8|1|DA|U|2131
5IT8|1|DA|U|2132
5IT8|1|DA|G|2133
5IT8|1|DA|A|2134
5IT8|1|DA|A|2135
5IT8|1|DA|G|2136
*
5IT8|1|DA|U|2155
5IT8|1|DA|G|2156
5IT8|1|DA|G|2157
5IT8|1|DA|A|2158
5IT8|1|DA|G|2159

Current chains

Chain DA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BL

30S ribosomal protein S12