IL_5IT8_338

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_338 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0385

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5IT8|1|DA|C|2350
5IT8|1|DA|G|2351
5IT8|1|DA|A|2352
5IT8|1|DA|G|2353
*
5IT8|1|DA|C|2364
5IT8|1|DA|G|2365
5IT8|1|DA|A|2366
5IT8|1|DA|G|2367

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L35

Chain DP

50S ribosomal protein L18

Chain DX

50S ribosomal protein L27