IL_5IT8_342

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_342 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.0636

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

5IT8|1|DA|A|2459
5IT8|1|DA|U|2460
5IT8|1|DA|A|2461
*
5IT8|1|DA|U|2489
5IT8|1|DA|G|2490
5IT8|1|DA|U|2491
5IT8|1|DA|U|2492
5IT8|1|DA|U|2493

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DN

50S ribosomal protein L16