IL_5IT8_403

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GUUAU*AAUUC

Length

10 nucleotides

Bulged bases

5IT8|1|DA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_403 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.058

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

5IT8|1|DA|G|930
5IT8|1|DA|U|931
5IT8|1|DA|U|932
5IT8|1|DA|A|933
5IT8|1|DA|U|934
*
5IT8|1|DA|A|844
5IT8|1|DA|A|845||A
5IT8|1|DA|U|846||A
5IT8|1|DA|U|847||A
5IT8|1|DA|C|848

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L30