IL_5IT9_019

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUG*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_019 not in the Motif Atlas

Homologous match to IL_4V88_400

Geometric discrepancy: 0.3301

The information below is about IL_4V88_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47298.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5IT9|1|2|C|269
5IT9|1|2|A|270
5IT9|1|2|U|271
5IT9|1|2|G|272
*
5IT9|1|2|U|282
5IT9|1|2|G|283
5IT9|1|2|G|284

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein eS6