IL_5IT9_022

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

5IT9|1|2|U|379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_022 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.0956

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5IT9|1|2|G|362
5IT9|1|2|G|363
5IT9|1|2|G|364
*
5IT9|1|2|C|375
5IT9|1|2|G|376
5IT9|1|2|A|377
5IT9|1|2|U|378
5IT9|1|2|U|379
5IT9|1|2|C|380

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain J

Ribosomal protein uS4

Chain X

Ribosomal protein uS21