IL_5IT9_032
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT9_032 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.1586
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
5IT9|1|2|A|549
5IT9|1|2|G|550
5IT9|1|2|G|551
5IT9|1|2|G|552
5IT9|1|2|C|553
5IT9|1|2|A|554
5IT9|1|2|A|555
5IT9|1|2|G|556
*
5IT9|1|2|C|586
5IT9|1|2|U|587
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uS5
- Chain J
- Ribosomal protein uS4
- Chain e
- Ribosomal protein eS30
- Chain i
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
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