IL_5IT9_037
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT9_037 not in the Motif Atlas
- Geometric match to IL_7RQB_053
- Geometric discrepancy: 0.2805
- The information below is about IL_7RQB_053
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
5IT9|1|2|C|626
5IT9|1|2|G|627
5IT9|1|2|U|628
5IT9|1|2|A|629
5IT9|1|2|G|630
*
5IT9|1|2|U|967
5IT9|1|2|C|968
5IT9|1|2|A|969
5IT9|1|2|A|970
5IT9|1|2|G|971
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain L
- Ribosomal protein uS17
- Chain N
- Ribosomal protein uS15
- Chain W
- Ribosomal protein uS8
- Chain X
- Ribosomal protein uS21
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