IL_5IT9_043
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 5IT9|1|2|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT9_043 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.3368
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5IT9|1|2|G|751
5IT9|1|2|A|752
5IT9|1|2|A|753
5IT9|1|2|A|754
5IT9|1|2|A|755
5IT9|1|2|A|756
5IT9|1|2|A|757
5IT9|1|2|U|758
5IT9|1|2|U|759
*
5IT9|1|2|A|790
5IT9|1|2|U|791
5IT9|1|2|A|792
5IT9|1|2|U|793
5IT9|1|2|U|794
5IT9|1|2|A|795
5IT9|1|2|G|796
5IT9|1|2|C|797
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- Ribosomal protein eS4
- Chain J
- Ribosomal protein uS4
- Chain L
- Ribosomal protein uS17
- Chain W
- Ribosomal protein uS8
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