IL_5IT9_049

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAUU*AAGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_049 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.3861

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

5IT9|1|2|G|884
5IT9|1|2|U|885
5IT9|1|2|A|886
5IT9|1|2|U|887
5IT9|1|2|U|888
*
5IT9|1|2|A|922
5IT9|1|2|A|923
5IT9|1|2|G|924
5IT9|1|2|A|925
5IT9|1|2|C|926

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein eS1

Chain O

Ribosomal protein uS14

Chain a

Ribosomal protein eS26