IL_5IT9_051
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 5IT9|1|2|C|1095, 5IT9|1|2|U|1097, 5IT9|1|2|G|1099
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT9_051 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.2033
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5IT9|1|2|C|1033
5IT9|1|2|G|1034
5IT9|1|2|A|1035
*
5IT9|1|2|U|1094
5IT9|1|2|C|1095
5IT9|1|2|U|1096
5IT9|1|2|U|1097
5IT9|1|2|U|1098
5IT9|1|2|G|1099
5IT9|1|2|G|1100
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uS5
- Chain L
- Ribosomal protein uS17
- Chain N
- Ribosomal protein uS15
- Chain V
- Ribosomal protein eS21
- Chain W
- Ribosomal protein uS8
- Chain X
- Ribosomal protein uS21
- Chain b
- Ribosomal protein eS27
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