IL_5IT9_054

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_054 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1205

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5IT9|1|2|G|1110
5IT9|1|2|G|1111
5IT9|1|2|A|1112
5IT9|1|2|G|1113
5IT9|1|2|U|1114
5IT9|1|2|A|1115
5IT9|1|2|U|1116
5IT9|1|2|G|1117
*
5IT9|1|2|U|1128
5IT9|1|2|G|1129
5IT9|1|2|A|1130
5IT9|1|2|A|1131
5IT9|1|2|A|1132
5IT9|1|2|C|1133

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

Ribosomal protein uS21