IL_5IT9_060
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUC*GUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT9_060 not in the Motif Atlas
- Geometric match to IL_4KYY_001
- Geometric discrepancy: 0.1708
- The information below is about IL_4KYY_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
5IT9|1|2|G|1212
5IT9|1|2|U|1213
5IT9|1|2|C|1214
*
5IT9|1|2|G|1446
5IT9|1|2|U|1447
5IT9|1|2|U|1448
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- Ribosomal protein eS10
- Chain P
- Ribosomal protein uS19
- Chain d
- Ribosomal protein eS29
- Chain f
- Ribosomal protein eS31
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