IL_5IT9_079

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_079 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.1732

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5IT9|1|2|G|1636
5IT9|1|2|C|1637
5IT9|1|2|C|1638
5IT9|1|2|C|1639
*
5IT9|1|2|G|1758
5IT9|1|2|U|1759
5IT9|1|2|A|1760
5IT9|1|2|A|1761
5IT9|1|2|C|1762

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain i

Cripavirus internal ribosome entry site (IRES); CrPV IRES