IL_5IT9_088

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_088 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.138

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5IT9|1|2|A|1676
5IT9|1|2|G|1677
5IT9|1|2|G|1678
5IT9|1|2|A|1679
5IT9|1|2|U|1680
*
5IT9|1|2|A|1717
5IT9|1|2|G|1718
5IT9|1|2|A|1719
5IT9|1|2|A|1720
5IT9|1|2|U|1721

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein eS6

Chain I

Ribosomal protein eS8