IL_5IT9_101
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 5IT9|1|2|C|1273, 5IT9|1|2|U|1430, 5IT9|1|2|G|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT9_101 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1229
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
5IT9|1|2|U|1271
5IT9|1|2|G|1272
5IT9|1|2|C|1273
5IT9|1|2|A|1274
5IT9|1|2|U|1275
5IT9|1|2|G|1276
5IT9|1|2|G|1277
*
5IT9|1|2|U|1428
5IT9|1|2|C|1429
5IT9|1|2|U|1430
5IT9|1|2|G|1431
5IT9|1|2|U|1432
5IT9|1|2|G|1433
5IT9|1|2|A|1434
5IT9|1|2|U|1435
5IT9|1|2|G|1436
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- Ribosomal protein uS3
- Chain K
- Ribosomal protein eS10
- Chain U
- Ribosomal protein uS10
- Chain d
- Ribosomal protein eS29
- Chain i
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
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