IL_8P9A_439

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGCAUGG*UCUGUGAUG

Length

16 nucleotides

Bulged bases

8P9A|1|sR|C|1274, 8P9A|1|sR|U|1432, 8P9A|1|sR|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86012.1

Basepair signature

cWW-tHS-tWH-cWH-cWW-L-L-cWW

Number of instances in this motif group

1

Unit IDs

8P9A|1|sR|U|1272
8P9A|1|sR|G|1273
8P9A|1|sR|C|1274
8P9A|1|sR|A|1275
8P9A|1|sR|U|1276
8P9A|1|sR|G|1277
8P9A|1|sR|G|1278
*
8P9A|1|sR|U|1430
8P9A|1|sR|C|1431
8P9A|1|sR|U|1432
8P9A|1|sR|G|1433
8P9A|1|sR|U|1434
8P9A|1|sR|G|1435
8P9A|1|sR|A|1436
8P9A|1|sR|U|1437
8P9A|1|sR|G|1438

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A

Chain d0

Small ribosomal subunit protein uS10

Chain d9

Small ribosomal subunit protein uS14A

Chain s3

Small ribosomal subunit protein uS3