IL_5IWA_064

3D structure

PDB id

5IWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

5IWA|1|A|G|1442, 5IWA|1|A|G|1443, 5IWA|1|A|A|1446

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IWA_064 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.3899

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5IWA|1|A|C|1440
5IWA|1|A|G|1441
5IWA|1|A|G|1442
5IWA|1|A|G|1443
5IWA|1|A|A|1446
5IWA|1|A|G|1447
*
5IWA|1|A|C|1459
5IWA|1|A|A|1460
5IWA|1|A|G|1461

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20