IL_5IWA_067

3D structure

PDB id

5IWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUGC*GCACUC

Length

11 nucleotides

Bulged bases

5IWA|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IWA_067 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.2497

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

5IWA|1|A|G|1124
5IWA|1|A|U|1125
5IWA|1|A|U|1126
5IWA|1|A|G|1127
5IWA|1|A|C|1128
*
5IWA|1|A|G|1144
5IWA|1|A|C|1145
5IWA|1|A|A|1146
5IWA|1|A|C|1147
5IWA|1|A|U|1148
5IWA|1|A|C|1149

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10