IL_5J01_001

3D structure

PDB id

5J01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GCAUG*CUUACC

Length

11 nucleotides

Bulged bases

5J01|1|A|U|13, 5J01|1|A|A|260, 5J01|1|A|C|261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J01_001 not in the Motif Atlas

Geometric match to IL_3IGI_001

Geometric discrepancy: 0.1109

The information below is about IL_3IGI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99498.1

Basepair signature

cWW-L-R-tHW-cWW

Number of instances in this motif group

1

Unit IDs

5J01|1|A|G|10
5J01|1|A|C|11
5J01|1|A|A|12
5J01|1|A|U|13
5J01|1|A|G|14
*
5J01|1|A|C|257
5J01|1|A|U|258
5J01|1|A|U|259
5J01|1|A|A|260
5J01|1|A|C|261
5J01|1|A|C|262

Current chains

Chain A

group II intron lariat

Nearby chains