5J01 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5J01_001 | 1/A/30:38 | T-loop with 2 stacked bulged bases | geometric HL_3IGI_001 HL_33597.3 | |
| HL_5J01_002 | 1/A/47:61 | Pseudoknot geometry with G-bulge | geometric HL_3IGI_002 HL_94488.1 | |
| HL_5J01_003 | 1/A/89:94 | No text annotation | homologous HL_5J02_003 NA | |
| HL_5J01_004 | 1/A/135:141 | No text annotation | homologous HL_5J02_004 NA | |
| HL_5J01_006 | 1/A/274:279 | GNRA | geometric HL_5Y7M_002 HL_34789.4 | |
| HL_5J01_008 | 1/A/338:343 | UNCG | geometric HL_4AY2_001 HL_61337.3 | |
| HL_5J01_009 | 1/A/368:373 | Pseudoknot geometry | geometric HL_6UFM_005 HL_12125.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5J01_005 | No text annotation | ||
| HL_5J01_007 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5J01_001 | 1/A/10:14, 1/A/257:262 | No text annotation | geometric IL_3IGI_001 IL_99498.1 | |
| IL_5J01_002 | 1/A/70:74, 1/A/113:117 | UAA/GAN variation | geometric IL_2R8S_006 IL_45790.2 | |
| IL_5J01_003 | 1/A/76:79, 1/A/103:111 | No text annotation | ||
| IL_5J01_004 | 1/A/128:129, 1/A/234:238 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_5J01_005 | 1/A/149:156, 1/A/221:225 | No text annotation | homologous IL_5J02_005 NA | |
| IL_5J01_006 | 1/A/158:161, 1/A/216:219 | No text annotation | homologous IL_5J02_006 NA | |
| IL_5J01_007 | 1/A/168:169, 1/A/197:209 | No text annotation | ||
| IL_5J01_008 | 1/A/172:175, 1/A/190:194 | No text annotation | homologous IL_5J02_008 NA | |
| IL_5J01_009 | 1/A/267:271, 1/A/282:286 | No text annotation | geometric IL_3IGI_010 IL_96788.1 | |
| IL_5J01_010 | 1/A/296:303, 1/A/316:321 | 8x6 Sarcin-Ricin with inserted A; G-bulge | geometric IL_3IGI_011 IL_61286.1 | |
| IL_5J01_011 | 1/A/332:334, 1/A/349:350 | Major groove intercalation | geometric IL_1U6B_010 IL_46637.2 | |
| IL_5J01_017 | 1/A/332:335, 1/A/346:350 | No text annotation | ||
| IL_5J01_012 | 1/A/334:335, 1/A/346:349 | Major groove platform with intercalated tWH | geometric IL_5DCV_006 IL_94991.2 | |
| IL_5J01_018 | 1/A/365:366, 1/A/375:378 | No text annotation | ||
| IL_5J01_014 | 1/A/392:393, 1/A/411:414 | Multiple bulged bases | geometric IL_5XWP_001 IL_71421.2 | |
| IL_5J01_015 | 1/A/397:399, 1/A/406:407 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5J01_016 | No text annotation | ||
| IL_5J01_013 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5J01_001 | 1/A/133:135, 1/A/141:145, 1/A/229:230 | No text annotation | ||
| J5_5J01_001 | 1/A/24:28, 1/A/40:43, 1/A/65:68, 1/A/119:123, 1/A/243:247 | No text annotation | ||
| J5_5J01_002 | 1/A/287:294, 1/A/323:328, 1/A/354:356, 1/A/387:390, 1/A/416:419 | No text annotation |
Problematic loops
No problematic loops
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