IL_5J01_005

3D structure

PDB id

5J01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

AUAUGAGG*UAAAU

Length

13 nucleotides

Bulged bases

5J01|1|A|U|152, 5J01|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J01_005 not in the Motif Atlas

Homologous match to IL_5J02_005

Geometric discrepancy: 0.1328

The information below is about IL_5J02_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J01|1|A|A|149
5J01|1|A|U|150
5J01|1|A|A|151
5J01|1|A|U|152
5J01|1|A|G|153
5J01|1|A|A|154
5J01|1|A|G|155
5J01|1|A|G|156
*
5J01|1|A|U|221
5J01|1|A|A|222
5J01|1|A|A|223
5J01|1|A|A|224
5J01|1|A|U|225

Current chains

Chain A

group II intron lariat

Nearby chains