IL_5J01_008

3D structure

PDB id

5J01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UGAG*CAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J01_008 not in the Motif Atlas

Homologous match to IL_5J02_008

Geometric discrepancy: 0.1091

The information below is about IL_5J02_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J01|1|A|U|172
5J01|1|A|G|173
5J01|1|A|A|174
5J01|1|A|G|175
*
5J01|1|A|C|190
5J01|1|A|A|191
5J01|1|A|A|192
5J01|1|A|A|193
5J01|1|A|G|194

Current chains

Chain A

group II intron lariat

Nearby chains