IL_5J01_009

3D structure

PDB id

5J01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GAGGU*AAGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J01_009 not in the Motif Atlas

Geometric match to IL_3IGI_010

Geometric discrepancy: 0.0899

The information below is about IL_3IGI_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96788.1

Basepair signature

cWW-tHW-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5J01|1|A|G|267
5J01|1|A|A|268
5J01|1|A|G|269
5J01|1|A|G|270
5J01|1|A|U|271
*
5J01|1|A|A|282
5J01|1|A|A|283
5J01|1|A|G|284
5J01|1|A|U|285
5J01|1|A|C|286

Current chains

Chain A

group II intron lariat

Nearby chains