IL_5J30_021
3D structure
- PDB id
- 5J30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5J30|1|QA|A|532, 5J30|1|QA|U|534, 5J30|1|QA|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J30_021 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.0932
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5J30|1|QA|G|515
5J30|1|QA|PSU|516
5J30|1|QA|G|517
5J30|1|QA|C|518
5J30|1|QA|C|519
5J30|1|QA|A|520
5J30|1|QA|G|521
*
5J30|1|QA|C|528
5J30|1|QA|G|529
5J30|1|QA|G|530
5J30|1|QA|U|531
5J30|1|QA|A|532
5J30|1|QA|A|533
5J30|1|QA|U|534
5J30|1|QA|A|535
5J30|1|QA|C|536
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QC
- 30S ribosomal protein S3
- Chain QD
- 30S ribosomal protein S4
- Chain QL
- 30S ribosomal protein S12
- Chain QX
- messenger RNA
- Chain QY
- Peptide chain release factor 1
Coloring options: